PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00655.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 598aa    MW: 65688 Da    PI: 8.3296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00655.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18399449155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++y+GVr ++ +gr++AeIrdp +   + r++lg+f++a eAa+a++aa+++l+g
  Rsa1.0_00655.1_g00014.1 399 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAVEAARAYDAAARNLRG 449
                              68********.**********743...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF024706.3E-7111181IPR003399Mce/MlaD
PfamPF008472.3E-12399449IPR001471AP2/ERF domain
CDDcd000182.69E-20399457No hitNo description
Gene3DG3DSA:3.30.730.104.1E-31400457IPR001471AP2/ERF domain
PROSITE profilePS5103223.13400457IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21400458IPR016177DNA-binding domain
SMARTSM003809.3E-38400463IPR001471AP2/ERF domain
PRINTSPR003672.7E-9401412IPR001471AP2/ERF domain
PRINTSPR003672.7E-9423439IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032365Biological Processintracellular lipid transport
GO:0009706Cellular Componentchloroplast inner membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005319Molecular Functionlipid transporter activity
GO:0005543Molecular Functionphospholipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSSSSMIISP RVYYPNGLPH LPPKPRTRQH LVARAASPSS QPEGKKSPLT VVLDVSRNIW  60
RQTLKPLSDF GFGKRSVWEG GVGLFLVSGA ALLALSWAWL RGFQMRAKFR KYQTVFDLSQ  120
ASGICTGTPV RICGVTVGTV IRVNPSLKNI EDVAEIIIPM NALVEVNQSG LLMETMINIT  180
PKDPIPEPSV GPLHQECGKE GLIVCDKEKI KGEQGVSLDE LVGIFTRMGC DVEEIGVANA  240
FSLAERAVPV IEDAKPLLKK IQAMAEDAQL LLSEFRDSGL LKEVECLTRS LTQASDDMRK  300
VNSTIMTLEN TELIQKSIYT LVYTLKNVEI FWDSHAMKPQ EKTLNYSSNL SVDYYDQQDT  360
DLSSFKSHYF WFPSLTMRKG RGSSVVPPAL HGGSAVKEPR YRGVRKRPWG RFAAEIRDPL  420
KKSRVWLGTF DSAVEAARAY DAAARNLRGS KAKTNFPLDC SPSSPLRPLN YQNQMDPFMD  480
HRLYGGGGGG GGGGSFQEQQ VISRPASSSL SSTVKSCSGP RPAAKTTKRY PRTPPVAPED  540
CHSDCDSSSS VIDDGDDIAS SSSRLRKAPF LFDLNLPPLD GVVDLFADDD LHCTDLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21401458361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-21397458264ATERF1
3gcc_A9e-21397458264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608265.10.0PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like
RefseqXP_013608271.10.0PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like
RefseqXP_013695706.10.0PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like
RefseqXP_013695707.10.0PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like
SwissprotQ9LTR20.0TGD2_ARATH; Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic
TrEMBLA0A0D3CI280.0A0A0D3CI28_BRAOL; Uncharacterized protein
STRINGAT3G20320.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1006723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.12e-60ethylene response factor 7